SERPIN Peptidase Inhibitor, Clade A, Member 1

Alternative Names

  • SERPINA1
  • Alpha-1-Antitrypsin
  • AAT
  • Protease Inhibitor 1
  • PI
  • PI1
  • Anti-Elastase
  • Antitrypsin

Associated Diseases

Lung Cancer
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OMIM Number

107400

Gene Map Locus
14q32.1

Description

The SERPINA1 gene encodes alpha-1-antitrypsin (AAT), also known as protease inhibitor (PI), a major plasma serine protease inhibitor. AAT helps control several types of chemical reactions by inhibiting the activity of certain enzymes. AAT complexes, predominantly, with elastase, but also with trypsin, chymotrypsin, thrombin, and bacterial proteases. The most important inhibitory action of AAT is that against neutrophil elastase (ELANE), a protease that is released from white blood cells to fight infection. AAT protects the lungs from neutrophil elastase, which can damage lung tissue if not tightly controlled by AAT. Also, AAT prevents the digestive enzyme trypsin from proteolytic cleavage of proteins until trypsin reaches the intestines. On the other hand, elevation of alpha1-AT serum levels have been observed in the course of a large number of malignant diseases.

Molecular Genetics

The SERPINA1 gene is located on the long arm of chromosome 14 at 14q32.1 and spans over 12.2 kb of genomic DNA with a coding sequence consisting of 7 exons. The AAT protein composes of 603 amino acids and weights 70,999 kDa.

More than 120 mutations in the SERPINA1 gene are found to be responsible for alpha-1 antitrypsin deficiency. Without enough functional AAT, neutrophil elastase can attack normal tissues (especially the lungs) and causes lung disease. Excessive damage to the alveoli (air sacs in the lung) leads to emphysema, an irreversible lung disease that causes extreme shortness of breath. Abnormal AAT can also accumulate in the liver and damage it.

The most common mutation that causes alpha-1 antitrypsin deficiency is Glu342Lys (E342K). This mutation results in a version of the SERPINA1 gene called the Z allele that produces very little alpha-1 antitrypsin.

Epidemiology in the Arab World

View Map
Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NM_001002235.2:c.1177C>TUnited Arab EmiratesNC_000014.9:g.94378529G>ALikely Pathogenic, Pathogenic, Uncertain SignificanceNG_008290.1:g.17164C>T; NM_001002235.2:c.1177C>T; NP_001002235.1:p.Pro393Ser61761869289135

Other Reports

Jordan

El-Akawi et al. (2006) studied Alpha-1 Antitrypsin genotypes in paraffin embedded tissue blocks from 100 patients with lung carcinoma.  PCR-RFLP analysis showed that all tested samples from these patients were homozygous for the M allele, while no Z or S alleles were detected.  Later, El-Akawi et al., (2008) studied the serum levels of alpha1-AT in lung, prostate and breast cancer patients compared to a control group.  Lung and prostate cancer patients have shown a significant elevation in alpha1-AT serum levels compared with those of healthy controls (P-value = 0,0001, 0,003 respectively), while breast cancer patients did not show a significant change in these levels. Serum levels of alpha1-AT were 261.7 +/- 107.26, 222.7 +/- 87.30, and 183.8 +/- 45.05 mg/dl of lung, prostate and breast cancer patients, respectively, while those of healthy controls were 163.9 +/- 23.2 mg/dl in males and 186.13 +/- 39.81 mg/dl in females.  El-Akawi et al. (2008) indicated that alpha1-AT plasma levels might be an alarming factor to be considered in the diagnosis as well as in the follow up of cancer cases.

Kuwait

In 1989, El Shirbiny performed a study to determine the levels of serum alpha-1-apantitrypsin [alpha 1AT] and the phenotypes of protease inhibitor [PI] in asthmatic patients and healthy controls. The M "normal" phenotype was less frequent in patients with bronchial asthma (82%) than in non-asthmatic controls (98%). On the other hand the Z phenotype, which is linked to severe alpha 1AT deficiency, was far more prevalent in the patients group (10%) than in the controls (2%). Upon clinical investigation of patients with the M or Z phenotypes, no significant relationships could be detected between these phenotypes and the following clinical parameters; type of asthma, severity of the disease, steroid dependency, smoking habits or age at onset. Still the higher frequency of deficient phenotypes in the asthmatic group may indicate a certain degree of causality that is made conspicuous by the harsh environmental conditions in Kuwait.

[El Shirbiny AF. Alpha-1-antitrypsin variants in bronchial asthma in Kuwait. Med Princ Pract. 1989; 1(2): 105-11]

Samilchuk et al. (1997) studied the frequency of the Taq1 polymorphism in the 3' flanking region of the PI gene in 117 Kuwaiti Arabs (native Kuwaitis and Bedouins) and 110 Russians who were randomly selected, using PCR/RFLP. Sixty-nine of the Kuwaiti individuals were found to be homozygous for the wild-type allele, 41 heterozygous and 7 homozygous for the G>A mutation and the corresponding numbers for Russians were 104, 6 and 0, respectively. Based on these genotype analyses, the frequency of this polymorphism was found to be 0.235 in the Arabs and 0.027 in the Russians. Samilchuk et al. suggested that such a striking difference in allele frequencies could be due to a 'founder effect' in the Kuwaiti population or it may also be that this mutation provides a selective advantage, thus, accounting for its fixation at a rather high frequency in some populations. The results of this study led Samilchuk et al. to suggest that ethnic composition is a very important factor which should be taken into consideration when studying the association of the Taq1 polymorphism with chronic obstructive pulmonary disease (COPD).

Morocco

Ezzikouri et al. (2008) studied the effect of hereditary hemochromatosis and SERPINA1 mutation on liver functions and assess their influence on hepatocellular carcinoma development. The study included 222 controls and 96 cases with hepatocellular carcinoma and this demonstrated that SERPINA1 mutations seem not to contribute to hepatocellular carcinoma development.

Saudi Arabia

Aljarallah et al. (2011) recruited 158 individuals from primary care clinic in Qassim University medical center in order to determine the frequency of AAT mutations in two alleles; PI*Z and PI*S in healthy Saudi individuals from Qassim area.  The genotype was determined by polymerase chain reaction.  Aljarallah et al. (2011) found that 11.39% of participants were carriers for mutant S allele, 2.53% were carriers for the mutant Z allele.  The ZZ genotype was not detected in this cohort.  He concluded that the frequency of the mutant S and Z alleles of AAT gene was relatively high in the Saudi population; 9.49% and 3.19%, respectively.  This warrants screening modality for at- risk members to alleviate the risk for AAT deficiency and potential risk of liver dysfunction.

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