Solute Carrier Family 4 (Sodium Bicarbonate Cotransporter), Member 4

Alternative Names

  • SLC4A4
  • Sodium Bicarbonate Cotransporter 1
  • NBC1
  • Solute Carrier Family 4 (Sodium Bicarbonate Cotransporter), Member 5, Formerly
  • SLC4A5
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OMIM Number

603345

NCBI Gene ID

8671

Uniprot ID

Q9Y6R1

Length

509,421 bases

No. of Exons

36

No. of isoforms

5

Protein Name

Electrogenic sodium bicarbonate cotransporter 1

Molecular Mass

121461 Da

Amino Acid Count

1079

Genomic Location

chr4:71,062,667-71,572,087

Gene Map Locus
4q13.3

Description

The SLC4A4 gene encodes the Na+-HCO3? co-transporter (NBC), which is involved in the regulation of bicarbonate secretion and absorption and intracellular pH. There is the kidney-type transporter (kNBC1) and the pancreatic-type transporter (pNBC1). kNBC1 plays an important role in bicarbonate absorption from renal proximal tubules, whilst pNBC1 is involved in bicarbonate secretion from pancreatic duct cells.

SLC4A4 is also widely expressed in several ocular tissues, such as the corneal endothelium, trabecular meshwork, pigmented and nonpigmented ciliary epithelium, and lens epithelium. Three transcripts are encoded by the SLC4A4 gene.

Molecular Genetics

The SLC4A4 gene spans approximately 450 kB and contains 26 exons. Exon 1 is specific to the pNBC1 transcript; while kNBC1 is transcribed from alternative promoters in intron 3.

Loss-of-function (mostly missense) mutations in the SLC4A4 gene can cause proximal renal tubular acidosis (pRTA) with ocular abnormalities. Based on functional studies it was concluded that at least 50% reduction of SLC4A4 activity is required for the disease to occur.

Epidemiology in the Arab World

View Map
Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NM_001098484.3:c.2230G>AUnited Arab EmiratesNC_000004.12:g.71532125G>ALikely PathogenicRenal Tubular Acidosis, Proximal, with Ocular Abnormalities and Mental RetardationNG_012653.1:g.349840G>A; NM_001098484.3:c.2230G>A; NP_001091954.1:p.Ala744Thr1293430331

Other Reports

Jordan

Horita et al. (2005) identified three new missense mutations in NBC1 from patients with pRTA and ocular abnormalities. One of these mutations was uncovered in a 12-year-old Jordanian (Bedouin) girl born to consanguineous first-cousin parents. She had a severe pRTA with growth delay and ocular complications. The patient was found to have the missense c.2643C>T mutation leading to p.R881C in the Na+-HCO3? co-transporter.

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