ATR-X Gene

Alternative Names

  • ATRX
  • Helicase 2, X-Linked
  • XH2
  • X-Linked Nuclear Protein Gene
  • XNP
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OMIM Number

300032

NCBI Gene ID

546

Uniprot ID

P46100

Length

281,358 bases

No. of Exons

37

No. of isoforms

6

Protein Name

Transcriptional regulator ATRX

Molecular Mass

282586 Da

Amino Acid Count

2492

Genomic Location

chrX:77,504,878-77,786,235

Gene Map Locus
Xq21.1

Description

The protein encoded by this gene contains an ATPase/helicase domain, and thus it belongs to the SWI/SNF family of chromatin remodeling proteins. This protein is found to undergo cell cycle-dependent phosphorylation, which regulates its nuclear matrix and chromatin association, and suggests its involvement in the gene regulation at interphase and chromosomal segregation in mitosis. Mutations in this gene are associated with X-linked syndromes exhibiting cognitive disabilities as well as alpha-thalassemia (ATRX) syndrome. These mutations have been shown to cause diverse changes in the pattern of DNA methylation, which may provide a link between chromatin remodeling, DNA methylation, and gene expression in developmental processes. Multiple alternatively spliced transcript variants encoding distinct isoforms have been reported. [From RefSeq]

Epidemiology in the Arab World

View Map
Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NM_000489.4:c.134-2A>GUnited Arab EmiratesNC_000023.11:g.77698631T>CPathogenicLikely PathogenicMental Retardation-Hypotonic Facies Syndrome, X-Linked, 1NG_008838.2:g.92591A>G; NM_000489.4:c.134-2A>G; NP_000480.3:p.?39812342093130
NM_000489.6:c.2617G>CLebanonchrX:77682639Uncertain SignificanceLikely PathogenicMental Retardation-Hypotonic Facies Syndrome, X-Linked, 1NG_008838.3:g.108631G>C; NM_000489.6:c.2617G>C; NP_000480.3:p.Glu873Gln967071645388508
NM_000489.6:c.3569G>CLebanonchrX:77681687PathogenicMental Retardation-Hypotonic Facies Syndrome, X-Linked, 1NG_008838.3:g.109583G>C; NM_000489.6:c.3569G>C; NP_000480.3:p.Arg1190Thr1557137075
NM_000489.6:c.5666T>GYemenchrX:77600465PathogenicAlpha-Thalassemia/Mental Retardation Syndrome, X-LinkedNG_008838.3:g.190805T>G; NM_000489.6:c.5666T>G; NP_000480.3:p.Leu1889Trp
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