Chloride Channel, Kidney, B

Alternative Names

  • CLCNKB
  • CLCKB
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OMIM Number

602023

NCBI Gene ID

1188

Uniprot ID

P51801

Length

13,545 bases

No. of Exons

20

No. of isoforms

2

Protein Name

Chloride channel protein ClC-Kb

Molecular Mass

75446 Da

Amino Acid Count

687

Genomic Location

chr1:16,043,781-16,057,325

Gene Map Locus
1p36.13

Description

The CLCNKA and CLCNKB channels are members of the ClC family, which comprises at least 9 mammalian chloride channels. Each is believed to have 12 transmembrane domains and intracellular N and C termini. Recent reports indicated that mutations in the ClC-Kb gene, CLCNKB, expressed in the distal nephron, can cause phenotypes that overlap with either antenatal Bartter syndrome or Gitelman syndrome.

Molecular Genetics

The CLCNKB gene includes 19 exons. Overall, the CLCNKB and CLCNKA genes show 94% DNA sequence identity in exons. The 2 genes are transcribed from the same DNA strand, with CLCNKA 5-prime of CLCNKB. The 2 genes are separated by 11 kb of genomic DNA.

Epidemiology in the Arab World

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Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NM_000085.5:c.490G>TUnited Arab EmiratesNC_000001.11:g.16048036G>TLikely PathogenicBartter Syndrome, Type 3; Gitelman SyndromeNG_013079.1:g.9285G>T; NM_000085.5:c.490G>T; NP_000076.2:p.Gly164Trp

Other Reports

Palestine

Zelikovic et al. (2003) examined the clinical, biochemical and genetic characteristics of a very large inbred Bedouin kindred in the lower Galilee with hereditary hypokalemic tubulopathy. All study participants underwent genetic linkage analysis. Mutation analysis was performed in affected individuals. Linkage analysis in affected patients excluded the TSC gene, SLC12A3, as the mutated gene, but demonstrated linkage to the Cl- channel gene, CLCNKB, on chromosome 1p36. Mutation analysis by direct sequencing revealed a novel homozygous missense mutation, arginine 438 to histidine (R438H), in exon 13 of CLCNKB in all patients. Zelikovic et al. (2003) indicated that the exact role of the CLCNKB R438H mutation in the pathogenesis of the electrolyte and mineral abnormalities in Gitelman syndrome and classic Bartter syndrome remains to be established.

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