Lymphotoxin-Alpha

Alternative Names

  • LTA
  • Lymphotoxin-A
  • Tumor Necrosis Factor, Beta
  • TNFB
  • TNF, Lymphocyte-Derived
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OMIM Number

153440

NCBI Gene ID

4049

Uniprot ID

P01374

Length

13,775 bases

No. of Exons

8

No. of isoforms

1

Protein Name

Lymphotoxin-alpha

Molecular Mass

22297 Da

Amino Acid Count

205

Genomic Location

chr6:31,560,549-31,574,323

Gene Map Locus
6p21.33

Description

Lymphotoxin Alpha (LTA), formerly known as Tumor Necrosis Factor Beta (TNFB), is a cytokine secreted by activated lymphocytes, which plays an important role in cell proliferation and differentiation, apoptosis, coagulation, neurotransmission, and development of secondary lymphoid organs. LTA mediates its effects in a homotrimeric or a heterotrimeric form with one or two LTB subunits. The homotrimeric form is secreted by the lymphocytes, and the ligand binds to TNFR1, thereby effecting further downstream reactions. The heterotrimeric form, on the other hand, contains LTB, which anchors the protein complex to the cell surface, and influences further downstream signaling cascades.

LTA polymorphisms have been implicated in the pathogenesis of atherosclerosis as well as coronary heart disease. In addition, a wide variety of tumor cells have been shown to secrete LTA.

Molecular Genetics

The LTA gene, covering about 2 Kb of DNA, maps to the short arm of chromosome 6. The LTA protein, weighing about 22.3 KDa, consists of 205 amino acids. One of the most important polymorphisms in the LTA gene is the A252G SNP in intron 1, which has been reported to significantly influence the level of the LTA transcript. Certain SNPs in the gene have also been noticed in patients with myocardial infarction, suggesting a role for LTA in granting susceptibility to this disorder.

Epidemiology in the Arab World

View Map
Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NM_000595.4:c.179C>ALebanonNC_000006.12:g.31573007C>ARisk factorBenignNG_012010.1:g.5909C>A; NM_000595.4:c.179C>A; NP_000586.2:p.Thr60Asn104198114379

Other Reports

Oman

Meenagh et al. (2002) used a PCR-SSOP method to detect the frequencies of TNFB polymorphisms in different populations, in order to identify global allelic variation and to establish a databank for future studies. Along with the other populations, 80 healthy Omani blood and bone marrow donors were also used in the study. Genomic DNA from these subjects was PCR amplified and resolved. Oligonucleotide probes were used to identify the regions of SNPs by subjecting the PCR products to hybridization with digoxigenin-labeled probes and chemiluminescent detection procedures. In the Omani population, the 252G and 252A SNPs showed allele frequencies of 40 and 60, respectively. The intermediate producing GA genotype showed a percentage of 45 in the Omani population, which was comparable to all other populations studied.

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