Collagen, Type II, Alpha-1

Alternative Names

  • COL2A1
  • Collagen, Type II
  • Collagen of Cartilage
  • Chondrocalcin
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OMIM Number

120140

NCBI Gene ID

1280

Uniprot ID

P02458

Length

33,246 bases

No. of Exons

57

No. of isoforms

3

Protein Name

Collagen alpha-1(II) chain

Molecular Mass

141785 Da

Amino Acid Count

1487

Genomic Location

chr12:47,972,966-48,006,211

Gene Map Locus
12q13.11

Description

This gene encodes the alpha-1 chain of type II collagen, a fibrillar collagen found in cartilage and the vitreous humor of the eye. Mutations in this gene are associated with achondrogenesis, chondrodysplasia, early onset familial osteoarthritis, SED congenita, Langer-Saldino achondrogenesis, Kniest dysplasia, Stickler syndrome type I, and spondyloepimetaphyseal dysplasia Strudwick type. In addition, defects in processing chondrocalcin, a calcium binding protein that is the C-propeptide of this collagen molecule, are also associated with chondrodysplasia. There are two transcripts identified for this gene. [From RefSeq]

Epidemiology in the Arab World

View Map
Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NM_001844.4:c.2050G>CLebanonNC_000012.12:g.47983137C>GLikely PathogenicSpondyloepiphyseal Dysplasia CongenitaNG_008072.1:g.26366G>C; NM_001844.4:c.2050G>C; NP_001835.3:p.Gly684Arg1231988113
NM_001844.5:c.1043G>ASaudi ArabiaNC_000012.12:g.47989786C>TLikely PathogenicPathogenicAchondrogenesis, Type IING_008072.1:g.19717G>A; NM_001844.5:c.1043G>A; NP_001835.3:p.Gly348Asp1347701
NM_001844.5:c.1993C>TOmanNC_000012.12:g.47983685G>APathogenicStickler Syndrome, Type ING_008072.1:g.25818C>T; NM_001844.5:c.1993C>T; NP_001835.3:p.Gln665Ter
NM_001844.5:c.2818C>TSaudi ArabiaNC_000012.12:g.47978674G>APathogenicPathogenicStickler Syndrome, Type ING_008072.1:g.30829C>T; NM_001844.5:c.2818C>T; NP_001835.3:p.Arg940Ter1057524114391509
NM_001844.5:c.3023G>TSaudi ArabiaNC_000012.12:g.47978098C>APathogenicPathogenicStickler Syndrome, Type ING_008072.1:g.31405G>T; NM_001844.5:c.3023G>T; NP_001835.3:p.Gly1008Val765795867374042
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