Chemokine, CXC Motif, Ligand 12

Alternative Names

  • CXCL12
  • Stromal Cell-Derived Factor 1
  • SDF1
  • Pre-B Cell Growth-Stimulating Factor
  • PBSF
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OMIM Number

600835

Gene Map Locus
10q11.1

Description

CXC chemokine ligand 12 (CXCL12), previously known SDF-1, is a CXC chemokine that binds and signals through CXCR4 receptor, playing important physiological roles in embryonic development, hematopoiesis and chemoattraction. CXCL12 is required for fetal liver-derived hematopoietic stem cells to colonize the bone marrow during embrogenesis and retention/homing of these cells in the bone marrow in the adult, and is a potent chemoattractant for T-lymphocytes, monocytes, and lympho-hematopoietic progenitor cells, and plays critical roles in developmental processes of the nervous and cardiovascular systems. In addition to these physiological functions, CXCL12 has an inhibitory activity against the HIV-1 infection through inhibiting cellular entry of HIV-1 virus, because CXCL12 is the physiological ligand for CXC4 receptor, which is one of the co-receptors for T tropic HIV-1 virus. However, CXCL12 has been proposed to play specific roles in different physiopathological processes, including chronic inflammatory diseases such as multiple sclerosis or rheumatoid arthritis, as well as tumor growth and metastasis progression.

Molecular Genetics

CXCL12 gene is located on the long arm of chromosome 10 at 10q11.1 and spans approximately 10 kb of genomic DNA with a coding sequence consisting of four exons. CXCL12 gene encodes for two isoforms, CXCL12 alpha and CXCL12 beta, which are a consequence of alternative splicing of a single gene. The alpha form is derived from exons 1 to 3 while the beta form contains additional sequence from exon 4.

The most important CXCL12 gene polymorphism is a single nucleotide polymorphism (G801A), designated CXCL12/SDF1-3-prime-A, located in an evolutionarily conserved segment of the 3-prime untranslated region of the CXCL12 structural gene transcript. This polymorphism was found to delay the onset of human immunodeficiency virus type 1 (HIV-1) disease. Since this polymorphism lies in the 3-prime untranslated region of the gene and, thus, it does not result in amino-acid substitution of the protein, the effects of this polymorphism on AIDS progression have been supposed to exert through the increased levels of CXCL12 expression, which in turn inhibits T-tropic HIV-1 and delays disease onset.

Epidemiology in the Arab World

View Map
Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NC_000010.11:g.44280376C>TLebanonNC_000010.11:g.44280376C>TBenign1746048
NM_199168.4:c.*531G>AUnited Arab EmiratesNC_000010.11:g.44378102C>TProtectiveProtectiveHuman Immunodeficiency Virus Type 1, Susceptibility ToNG_016861.2:g.11996G>A; NM_199168.4:c.*531G>A; NP_954637.1:p.?3879064008762

Other Reports

Bahrain

Salem et al. (2009) investigated the frequencies of the SDF1-3-prime-A, CCR5-Delta32, CCR5-m303, and CCR2-64I mutations in 304 unrelated healthy Bahraini individuals without any known history of HIV-1 infection or AIDS symptoms. The frequency of the SDF1-3-prime-A allele was found to be 26.5%. Salem et al. (2009) concluded that the SDF1-3-prime-A allele is predominant in the Bahraini population and may be associated with resistance to fast HIV-1 infection in Bahrainis, and thus its genotyping can be used for prognosis in HIV-infected individuals.

Kuwait

Voevodin et al. (1999) undertook a molecular study to determine the frequency of the SDF1-3'A mutation in a population sample of native Kuwaitis. The frequency of the SDF1-3'A mutant allele was found to be 0.2593 (95% CI 0.2024-0.3231). Voevodin et al. (1999) concluded that the SDF1-3'A mutation is sufficiently common in Arabs and can be used for prognostic genotyping in HIV-infected individuals from the Gulf countries.

Saudi Arabia

Wakil et al. (2016) studied the association of gene loci with Coronary Artery Disease (CAD) and Myocardial Infarction (MI) in Saudi populations.  A total of 2668 cases and 3000 controls were recruited for the GWAS study and blood was obtained from the arterial access site.  Genotyping and statistical analysis were carried out.  The SNP rs1746049 on the CXCL12 gene was found to have a suggestive association with CAD [p=2.44E-06, OR=0.8(0.73-0.88)].  The allele rs1746049_C was protective against CAD.  While the exact effect of the SNP on the etiology of CAD is currently unknown, it must be noted that previously reported studies have linked CXCL12 to MI, atherosclerosis, carotid intima thickness and type II diabetes mellitus, albeit in different ethnic groups. 

Tunisia

Ben Nasr et al. (2011) explored the influence of CXCL12 polymorphisms in a cohort of Tunisian patients with malignant hematologic diseases multiple myeloma [MM], non-Hodgkin's lymphoma [NHL], Hodgkin's disease, and acute myeloid leukemia [AML], who underwent stem cell mobilization for autologous transplantation versus a group of healthy donors for allogeneic transplantation. Significant associations for the G801A polymorphism were observed exclusively in patients with MM and NHL in contrast to a lack of association in AML patients. Interestingly, Ben Nasr et al. (2011) found an association among healthy allogeneic transplant donors although the analysis was not biased by background disease or chemotherapy (P=.010; odds ratio=2.603; confidence interval [95%]=1.239-5.466).

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