The PAX6 (Paired Box 6) gene, a member of the paired box gene family, is located on the short arm of chromosome 11, where it spans a length of more than 22 kb. The entire gene is made up of 14 exons, including an alternatively splicing exon 5a, and generates three transcript isoforms by alternative splicing. The protein coded for by the gene is a transcription factor involved in several development pathways and expressed early in the development of the eye, numerous regions of the brain, and the pancreas. The protein contains three domains; a paired domain (PD) in the N-terminus, a proline-serine-threonine (PST) transregulatory domain in the C-terminus and a homeodomain (HD) separated by a glycine-rich linker sequence in the middle.
PAX6 has been isolated as a candidate gene for Congenital Aniridia, an ocular disorder characterized by partial or complete absence of the iris. Heterozygous mutations are found in about 40-80% of all non-syndromic aniridia patients. Causal mutations in the PAX6 gene are also found in other disorders of the eye, including cataract with late onset corneal dystrophy, coloboma of optic nerve, foveal hyperplasia, keratitis, morning glory disc anomaly, and Gillespie syndrome.