C5orf42 is a highly conserved gene that encodes a protein with a coiled coil domain. Based on its role in lower species, the protein is thought to be involved in cilium assembly, cerebellum development, establishment of planar polarity, palate development and embryonic digit morphogenesis.
Mutations in C5orf42 are associated with Joubert Syndrome 17 (JBTS17), a disorder characterized by brain anomalies such as cerebellar vermian hypoplasia/aplasia, thickened and reoriented superior cerebellar peduncles, and an abnormally large interpeduncular fossa. C5orf42 mutations can also result in Orofaciodigital Syndrome VI (OFD6). This rare disease also presents with brain anomalies such as in JBTS17, but is accompanied by malformations of the oral cavity, face and metacarpals with central polydactyly.