Collagen, Type VI, Alpha-2

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OMIM Number

120240

NCBI Gene ID

1292

Uniprot ID

P12110

Length

34,779 bases

No. of Exons

30

No. of isoforms

1

Protein Name

Collagen alpha-2(VI) chain

Molecular Mass

108579 Da

Amino Acid Count

1019

Genomic Location

chr21:46,098,071-46,132,849

Gene Map Locus
21q22.3

Description

This gene encodes one of the three alpha chains of type VI collagen, a beaded filament collagen found in most connective tissues. The product of this gene contains several domains similar to von Willebrand Factor type A domains. These domains have been shown to bind extracellular matrix proteins, an interaction that explains the importance of this collagen in organizing matrix components. Mutations in this gene are associated with Bethlem myopathy and Ullrich scleroatonic muscular dystrophy. Three transcript variants have been identified for this gene. [From RefSeq]

Epidemiology in the Arab World

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Variant NameCountryGenomic LocationClinvar Clinical SignificanceCTGA Clinical Significance Condition(s)HGVS ExpressionsdbSNPClinvar
NM_001849.4:c.1332+2T>CSaudi ArabiaNC_000021.9:g.46119852T>CPathogenicPathogenicBethlem myopathy 1BNG_008675.1:g.26734T>C; NM_001849.4:c.1332+2T>C; NP_001840.3:p.?20785326871407076
NM_001849.4:c.1459-63G>ASaudi ArabiaNC_000021.9:g.46121493G>ALikely BenignUncertain SignificanceUllrich congenital muscular dystrophy 1BNG_008675.1:g.28375G>A; NM_001849.4:c.1459-63G>A; NP_001840.3:p.?9147947711678765
NM_001849.4:c.2422+1G>ASaudi ArabiaNC_000021.9:g.46126238G>APathogenicPathogenicBethlem myopathy 1BNG_008675.1:g.33120G>A; NM_001849.4:c.2422+1G>A; NP_001840.3:p.?113828929280693
NM_001849.4:c.2611G>ALebanonchr21:46132103Likely Pathogenic, PathogenicPathogenicUllrich Congenital Muscular Dystrophy 1NG_008675.1:g.38985G>A; NM_001849.4:c.2611G>A; NP_001840.3:p.Asp871Asn38790661029644
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