CDKN2A is known to be a classic tumor suppressor gene. The gene codes for a protein, p16, which is an inhibitor of cyclin dependent kinases, and thus, acts as a negative regulator of cell proliferation. p16 interacts strongly with cyclin-dependent kinases 4 and 6 and inhibits their ability to interact with cyclins D, blocking them from phosphorylating the retinoblastoma protein (RB1). This induces cell cycle arrest at G1 and G2/M checkpoints, and prevents exit from G1 phase of the cell cycle. Mutations in the gene cause the protein to lose their capacity to block the Cyclin D/CDK4 activation, resulting in uncontrolled cell proliferations, and development of malignancies. Apart from mutations, hypermethylation of the gene has also been shown to cause inactivation in some cancers. A splice variant of the gene, p14/ARF plays its part in regulating cell proliferation by sequestering the p53 binding protein MDM2 in the nucleolus, and thereby accumulating p53, which is followed by p53 mediated apoptosis of the cell.
Mutations in this locus have been found in familial melanomas (20%), and familial atypical multiple mole melanoma carcinoma syndrome (40%). Among sporadic tumors, p16/INK4A mutations are present in up to 50% of pancreatic adenocarcinomas and squamous cell carcinomas of the esophagus, and have also been detected in bladder, head, and neck tumors and in cholangiocarcinomas.